wildrootlab/SHARCQ
Tools to register histological section images and cell count locations to mouse brain atlas
MATLAB
Issues
- 2
- 2
Problem registering from slice 2 on
#19 opened by andrestrocyte - 0
Some issues and possible fixes
#18 opened by adgpta - 0
- 0
Unable to Transform Image
#16 opened by McCoya1 - 0
cannot Register Sections to Atlas
#15 opened by sabqui - 1
Brain structure shown together with cells or colorcoded cells based on where they are
#14 opened by tang37 - 0
Issues with Pre-Process Images
#13 opened by liuquansong - 0
- 3
Issues with ROI Warping
#11 opened by marhmue - 9
Cannot run the code
#6 opened by suwangcn - 0
Analyze Section with Allen Atlas
#10 opened by liwenjaun - 0
Batch pre-processing
#9 opened by kcaplan99 - 4
Step 4: Analyze Section with Allen Atlas
#8 opened by winkyfong - 5
- 3
Unable to use GUI
#4 opened by cadeichsel - 2
Example data
#5 opened by dhino2000