Pinned Repositories
aizynthfinder
A tool for retrosynthetic planning
bch_RetroBioHub
bio-embeddings-fastapi-docker
A quick fast api docker for bio embeddings
blast_for_joe
quick bit of code to run tblastn searches on a local nucleotide genome
kinetics
Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions
Rapid_model_based_optimisation
Rapid_model_based_optimisation
RetroBioCat
RetroBioCat-2
retrobiocat-db
Seven_enzyme_biotransformation_2019
Engineering a seven enzyme biotransformation using mathematical modelling and characterized enzyme parts, W. Finnigan et al, 2019, https://doi.org/10.1101/603795
willfinnigan's Repositories
willfinnigan/kinetics
Python package for modelling enzyme reactions using Monte carlo sampling from parameter distributions
willfinnigan/RetroBioCat
willfinnigan/RetroBioCat-2
willfinnigan/retrobiocat-db
willfinnigan/aizynthfinder
A tool for retrosynthetic planning
willfinnigan/bch_RetroBioHub
willfinnigan/bio-embeddings-fastapi-docker
A quick fast api docker for bio embeddings
willfinnigan/blast_for_joe
quick bit of code to run tblastn searches on a local nucleotide genome
willfinnigan/buyable_molecules
willfinnigan/codonOpt
willfinnigan/Rapid_model_based_optimisation
Rapid_model_based_optimisation
willfinnigan/corporate_hotel_kata
willfinnigan/dp_model
willfinnigan/flask_template
willfinnigan/fluffy-waddle
willfinnigan/glycomass
willfinnigan/hell_analysis
willfinnigan/hive_game
willfinnigan/HydrogenBorrowing_Modelling
Exploring enzyme reaction models to model hydrogen borrowing cascades
willfinnigan/JLR_Kata
willfinnigan/katas
willfinnigan/low-n-protein-engineering
A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented in Biswas et al.
willfinnigan/osr_api
willfinnigan/osra_api
Docker container with FastAPI for using OSRA
willfinnigan/reaction_utils
Utilities for working with datasets of chemical reactions, reaction templates and template extraction.
willfinnigan/retrobiocat_base_container
willfinnigan/retrobiocat_docker_deploy
willfinnigan/SALib
Sensitivity Analysis Library in Python (Numpy). Contains Sobol, Morris, Fractional Factorial and FAST methods.
willfinnigan/simple_codon
a simple script for codon optimisation
willfinnigan/unirep_fastapi
a quick api for generating embeddings