The nextflow workflow for the virus_classification application
- Run the processes in
micromamba-containers
: - bracken (bayesian estimation of abundance)
- CAT/BAT
- Simka
- Run kraken/kaiju on the assembled MAGS/BINS/Contigs
The nextflow workflow for the virus_classification application
Jupyter Notebook
The nextflow workflow for the virus_classification application
micromamba-containers
: