willros/virusclassification_nextflow

The nextflow workflow for the virus_classification application

virusclassification_nextflow

The nextflow workflow for the virus_classification application

Will include:

• Run the processes in micromamba-containers:
  • https://github.com/mamba-org/micromamba-docker
• bracken (bayesian estimation of abundance)
• CAT/BAT
• Simka
• Run kraken/kaiju on the assembled MAGS/BINS/Contigs