willtownes

glmpca

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

mit6882

Course Project for MIT 6.882- Bayesian Modeling

nsf-paper

Nonnegative spatial factorization for multivariate count data

quminorm

Turning the quasi-UMI method into a bioconductor package

quminorm-paper

supporting code for the quasi-UMIs single-cell RNA-seq paper

scrna2019

supporting code for the multinomial single cell RNA-Seq paper

spatial-factorization-py

Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.

vamf-paper

supporting code for the Varying-Censoring Aware Matrix Factorization paper

willtownes/glmpca

willtownes/glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

willtownes/scrna2019

supporting code for the multinomial single cell RNA-Seq paper

willtownes/nsf-paper

Nonnegative spatial factorization for multivariate count data

willtownes/spatial-factorization-py

Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.

willtownes/quminorm

Turning the quasi-UMI method into a bioconductor package

willtownes/quminorm-paper

supporting code for the quasi-UMIs single-cell RNA-seq paper

willtownes/mit6882

Course Project for MIT 6.882- Bayesian Modeling

willtownes/vamf-paper

supporting code for the Varying-Censoring Aware Matrix Factorization paper

willtownes/vamf

Varying-Censoring Aware Matrix Factorization R package

willtownes/edward

Sandbox for experimenting with the Edward probabilistic modeling framework in python.

willtownes/optimization-practice

sandbox for practice implementing optimization algorithms

willtownes/patel2014gliohuman

A Bioconductor "Summarized Experiment" from the Patel et al. (2014) paper that performed single cell RNA-Seq analysis on human glioblastoma tissue.

willtownes/python

Miscellaneous Python stuff I am working on

willtownes/stan

practicing with stan

willtownes/cthw

Learning C "the hard way" http://c.learncodethehardway.org/book/

willtownes/ebola-hackathon-2014

http://hackebolawithdata.challengepost.com/

willtownes/epidatr

[DRAFT] Delphi Epidata API R Client

willtownes/gp

Gaussian Processes and Bayesian Optimization

willtownes/haskell

sandbox for learning Haskell

willtownes/hca-jamboree-how-many-cells

willtownes/longevity-paper

Supporting code for the paper "Identifying Longevity Associated Genes by Integrating Gene Expression and Curated Annotations"

willtownes/marsh

salamander ecology

willtownes/naivebayes

High performance implementation of the Naive Bayes algorithm in R

willtownes/ped_parser

A python tool for parsing pedigree files

willtownes/scLVM

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

willtownes/tensorflow

sandbox for practice with tensorflow models

willtownes/Web

Learning how to do web stuff like javascript

willtownes/willtownes.github.io

personal website/blog for technical topics (non-technical blog is at willtownes.wordpress.com )

willtownes/ZIFA

Zero-inflated dimensionality reduction algorithm for single-cell data