Pinned Repositories
3DAROC
#DAROC Course, starting in 2016
ABM_Epidemic
Agent-Based Model to simulate infectious disease outbreaks
BioInfoCours
Some files for a BioInformatic course
countIslands
Estimating the number of islands under an n-island model
DHNDiff
Inferring parameters of the demographic history from the Number of Differences of two haploid sequences.
dishonestCasino
Some python functions on the "Occasionally Dishonest Casino" example described in Durbin et al., “Biological Sequence Alignment” (Cambridge, ‘98)
EMHMM
A python implementation of the Generalized EM for a Hidden Markov Model
FactoringNumbers
Python implementations of Fermat's factorization method and some improvements
IICREstimator
A python script for estimate the Inverse Instantaneous Coalescent Rate from coalescent times simulated with the ms software.
ms-PSMC
Useful scripts when applying the psmc to simulated data with ms
willyrv's Repositories
willyrv/ms-PSMC
Useful scripts when applying the psmc to simulated data with ms
willyrv/EMHMM
A python implementation of the Generalized EM for a Hidden Markov Model
willyrv/3DAROC
#DAROC Course, starting in 2016
willyrv/ABM_Epidemic
Agent-Based Model to simulate infectious disease outbreaks
willyrv/BioInfoCours
Some files for a BioInformatic course
willyrv/countIslands
Estimating the number of islands under an n-island model
willyrv/DHNDiff
Inferring parameters of the demographic history from the Number of Differences of two haploid sequences.
willyrv/FactoringNumbers
Python implementations of Fermat's factorization method and some improvements
willyrv/figures_IICR_matplotlib
some scripts to produce figures for the IICR
willyrv/IICR_Qmatrix
some R functions to compare the theoretical IICR and the IICR from simulated T2 values under different models
willyrv/microSDcheck
Check if a microSD really has the capacity that the system reports
willyrv/MS-PSMC_experiments
automatic analysis of MS simulated data with PSMC
willyrv/msmc-phasing-err
Script for adding phasing errors to the msmc input file
willyrv/newickCoalTimes
Parsing the newick tree format to get the coalescence times
willyrv/nimc
N island Markov Chain
willyrv/nssc-scenario-specification
Specification for describing a scenario that can be described using the nssc framework
willyrv/offspringSimulator
Some R functions to simulate the offspring of two diploid individuals
willyrv/OMMB
Website of the OMMB workshop
willyrv/PGDH
willyrv/PGDH19
PGDH19 - Population Genetics Demographic History: model-based approaches
willyrv/projet2MIC
Introduction to Hidden Markov Chains
willyrv/python-mic
willyrv/revocraw
This is a python script for crawling the adds in the revolico website. It puts the adds into a sqlite database
willyrv/SSPSC_vs_StSI
Scripts for comparing the SSPSC (Simple Step Population Size Change) and StSI (Structured Symmetric Island) models
willyrv/StSICMR-Inference
willyrv/T2_T3_lambda
Scripts for comparing the distributions of T2_3 (the T2 after a T3 in a coalescence tree of 3 genes) under two models
willyrv/tmv
topic model visualization
willyrv/TP_MA3008_Stats
Notebooks pour les TP de Statistique
willyrv/willyrv.github.io
My github website