This repo contains the material for NBIS workshop Analysis of RNA-Seq data. The rendered view of this repo is available here.
To add or update contents of this repo (for collaborators), first clone the repo.
git clone https://github.com/nbisweden/workshop-RNAseq.git
Make changes/updates as needed. Add the changed files. Commit it. Then push the repo back.
git add .
git commit -m "I did this and that"
git push origin
If you are not added as a collaborator, first fork this repo to your account, then clone it locally, make changes, commit, push to your repo, then submit a pull request to this repo.
❗ When updating repo for a new course, change output_dir: XXXX in _site.yml as the first thing, so that old rendered files are not overwritten.
❗ Do not push any rendered .html files or intermediates.
The 3-day course source material is located on the master branch (default). The 2-day course material is located on the twoday branch. The rendered material is located on the gh-pages branch. For most part, one only needs to update content in master. Changes pushed to the master or twoday branches are automatically rendered to the gh-pages branch.
❗ The first build can take around 40 mins depending on the number of R packages. Subsequent builds take about 6-7 minutes since caching is enabled. Caches are removed after 7 days of last access. A push after that will require a full rebuild.
For more details about repo organisation, updating and modifying this repo, check out the template repo.
2021 • NBIS • SciLifeLab