A package to estimate organ-specific biological age using aging models trained on SomaScan plasma proteomics data (Oh and Rutledge et al. Nature 2023 https://doi.org/10.1038/s41586-023-06802-1)
organage package requires only a standard computer with enough RAM to support the in-memory operations.
This package is supported for macOS and Linux. The package has been tested on the following systems:
- maxOS 11.7.1
- Linux: CentOS 7.x
- python>=3.9 and <=3.10
- dill>=0.3.6
- pandas>=1.5.3
- scikit-learn==1.0.2. aging models were trained using this specific version of scikit-learn
$ pip install organage- see docs/Predict organage example.ipynb
organage was created by Hamilton Oh. It is licensed under the terms of the MIT license.
organage was created with cookiecutter and the py-pkgs-cookiecutter template.