local version of M5NR
To build this image:
git clone --recursive https://github.com/MG-RAST/myM5NR.git
To build the image either download the Docker file into an empty directory of provide the url to Dockerfile as in this example:
docker build -t mgrast/m5nr-build .
Example for manual invocation:
docker run -ti --name m5nr -v/var/tmp/m5nr:/m5nr_data mgrast/m5nr-build
From now steps execute inside the container
Set up some environment bits
mkdir -p /m5nr_data/Sources
mkdir -p /m5nr_data/Parsed
source /myM5NR/sources.cfg
To initiate the download
/myM5NR/bin/download_m5nr_sources.sh /m5nr_data/Sources 2>&1 | tee /m5nr_data/Sources/logfile.txt
To initiate the build
/myM5NR/bin/source2ach.sh 4 /m5nr_data/Sources /m5nr_data/Parsed 2>&1 | tee /m5nr_data/Parsed/logfile.txt