Pinned Repositories
3KRG-HAP
Haplotype marker based on 3,000 Rice Genomes for subpopulation inference
AlignmentConverters
Convert between common sequence alignment formats
alphafold
Open source code for AlphaFold.
AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
Assemblytics
Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
asset-prev
assembly evaluation tool
Augustus_train
Augustus Train pipline
Badread
a long read simulator that can imitate many types of read problems
bamdst
a lightweight bam file depth statistical tool
GenomeSV
scripts uesed in SV analysis
wolongac's Repositories
wolongac/3KRG-HAP
Haplotype marker based on 3,000 Rice Genomes for subpopulation inference
wolongac/alphafold
Open source code for AlphaFold.
wolongac/AnchorWave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
wolongac/Badread
a long read simulator that can imitate many types of read problems
wolongac/bamdst
a lightweight bam file depth statistical tool
wolongac/ChatYuan
ChatYuan: Large Language Model for Dialogue in Chinese and English
wolongac/chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
wolongac/cuteSV
Long read based human genomic structural variation detection with cuteSV
wolongac/EDTA
Extensive de-novo TE Annotator
wolongac/GAAP
A genome assembly assessment pipeline.
wolongac/genomescope
Fast genome analysis from unassembled short reads
wolongac/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
wolongac/graphtyper
Population-scale genotyping using pangenome graphs
wolongac/GREPore-seq
wolongac/localcolabfold
ColabFold on your local PC
wolongac/MACS
MACS -- Model-based Analysis of ChIP-Seq
wolongac/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
wolongac/NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
wolongac/NanoSim
Nanopore sequence read simulator
wolongac/NLR-Annotator
NLR-Annotator upload
wolongac/OpenCRISPR
AI-generated gene editing systems
wolongac/pbsim2
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
wolongac/PcG_finder
protein homologous finder
wolongac/plotsr
Tool to plot synteny and structural rearrangements between genomes
wolongac/quast
Genome assembly evaluation tool
wolongac/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
wolongac/scGENA
single cell Gene co-Expression Network Analysis
wolongac/SURVIVOR
Toolset for SV simulation, comparison and filtering
wolongac/VCF2HAP
Construct gene haplotype with VCF format files and snpEff annotation.
wolongac/WFA
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment