FullCfRNAtools v1.0
This pipeline is designed for PALM-seq which is a new method to get all sorts of RNA in one library
1. Bgzip/gzip
2. cutadapt
3. bowtie
4. samtools
5. rsem
6. STAR
- Final_cfRNAPipe.pl :Generate all shell scripts for all given samples
- Remove_har_miRNA.pl :Remove harpin miRNA from miRNA mapping result
- miRNA_Count_RPM.pl :Count the miRNA reads and scale to RPM
- tpiRNA_Count_RPM.pl :Count the tRNA and piRNA reads and scale to RPM