/snpeff_class_variant_in_region

Classify the variation types annotated by snpeff into genomic regions

Primary LanguagePython

snpeff_class_variant_in_region

Classify the variation types annotated by snpeff into genomic regions

step1: less snpeff.vcf |awk -F"\t|\\|" '{printf ("%s\t%s\t%s\t%s\n", $1,$2,$3,$9)}' > input.file
step2: python anno_region.py input.file > out.file

vep_class_variant_in_region

run command: python anno_class_vep.py vcf.file > out.file