wrf
I work on bioluminescence, genomics, and data visualisation. Also see https://bitbucket.org/wrf/ for project data
Remote
Pinned Repositories
fastalang
fasta language definition file for gedit and other related configurations
genome-size
examination of genome size across all kingdoms
genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
graphphylo
visualization of phylogenetic output files
heteropecilly
in depth analysis of heteropecillious sites in supermatrices
lavaLampPlot
instructions, python and R code for generating lava lamp plots of kmer coverage
map_code_in_R
code for map plotting
misc-analyses
other analyses of diverse topics including food, demography, tourism, mapping, and more
pdbcolor
Python code to color a PDB structure based on parameters from a multiple sequence alignment
supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
wrf's Repositories
wrf/genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
wrf/pdbcolor
Python code to color a PDB structure based on parameters from a multiple sequence alignment
wrf/graphphylo
visualization of phylogenetic output files
wrf/supermatrix
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
wrf/lavaLampPlot
instructions, python and R code for generating lava lamp plots of kmer coverage
wrf/genome-size
examination of genome size across all kingdoms
wrf/misc-analyses
other analyses of diverse topics including food, demography, tourism, mapping, and more
wrf/fastalang
fasta language definition file for gedit and other related configurations
wrf/heteropecilly
in depth analysis of heteropecillious sites in supermatrices
wrf/map_code_in_R
code for map plotting
wrf/brizzy
A program to easily take spectra with Ocean Optics spectrometers. It's a breeze to use.
wrf/copy-exif-meta
automate copying of EXIF metadata from video to framegrabs
wrf/envbiogeo-mgap
information and code for course projects for the biogeochemical cycles class 2021
wrf/erc-success
analysis of success of ERC grant applications
wrf/euk-sterol-hopene
datasets for paper on evolution of sterol and hopene metabolism in eukaryotes
wrf/figure-gallery
gallery of problematic paper figures
wrf/foodbalance
analysis of global food balance
wrf/Homo
Homo v1.3: A program for analysing compositional heterogeneity across aligned sequence data
wrf/microbe-ethanol
examination of microbial tolerance to ethanol
wrf/neoproterozoic
figures and raw data on emergence of animals and the Tonian earth system
wrf/oceanography_scripts
oceanography code
wrf/stringtie
Transcript assembly and quantification for RNA-Seq
wrf/taxonomy_database
frequency of high level ranks in sequence databases
wrf/wrf.github.io
personal website for WRF
wrf/yeast-genomics
some analyses on fungal genomes