wtsi-mercury

Pinned Repositories

• arvados-pipelines

  HGI arvados pipelines (crunch scripts, container Dockerfiles, pipeline templates, etc)

  Language:Python3362

• bsub_jupyter_lab

  start jupyterlab python and R server on LSF farm5 node via bsub

  Language:Python6305

• hgi-image-creation

  Builds on ISG's image-creation to allow provisioning images using entire ansible playbooks remotely

  Language:Shell01

• hgi-reports

  Various reports for compute and storage usage.

  Language:JavaScript00

• hgi-systems

  Orchestration and configuration management of hgi systems (using terraform & ansible)

  Language:HCL36513

• lofi

  Sequence alignment data downsampling tool

  Language:Shell00

• metadata-check

  Tests to perform on the iRODS metadata for a BAM file, versus the information in the file header

  Language:Python219163

• nextflow-pipelines

  Nextflow HGI pipelines

  Language:Nextflow4402

• nf_scrna_deconvolution

  CellSNP-Vireo deconvolution pipeline, with optional genotype input.

  Language:Nextflow11

• yascp

  scRNA multimodal analysis pipeline utilised for large dataset processing

  Language:Python14427

wtsi-mercury's Repositories