Pinned Repositories
ceph-disk-utils
Shell utilities for managing disks within ceph clusters
irods_testing
lsf-log-watch
LSF log watching via AMQP
mpistat
Efficiently lstat every file in a filesystem tree in parallel across multiple nodes using MPI.
objectbench
os-cluster
osdataproc
osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
pcp
Parallel copy tool
pwalk
Parallel filesystem walking utilities and library.
wr
experimental reimplementation of wr using TDD
Sanger Institute Systems Group's Repositories
wtsi-ssg/pcp
Parallel copy tool
wtsi-ssg/pwalk
Parallel filesystem walking utilities and library.
wtsi-ssg/ceph-disk-utils
Shell utilities for managing disks within ceph clusters
wtsi-ssg/lsf-log-watch
LSF log watching via AMQP
wtsi-ssg/osdataproc
osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.
wtsi-ssg/wr
experimental reimplementation of wr using TDD
wtsi-ssg/image-creation
wtsi-ssg/irods_migrate
tooling for bulk migration of data in iRODS using parallel iphymv
wtsi-ssg/letsencrypt-rgw
LetsEncrypt Support for the Ceph RADOS gateway
wtsi-ssg/mistral_benchmarking_cromwell_nextflow
wtsi-ssg/mpistat
Efficiently lstat every file in a filesystem tree in parallel across multiple nodes using MPI.
wtsi-ssg/os-cluster
wtsi-ssg/benchmarking
A benchmarking suite for Sanger's Genomics Workloads
wtsi-ssg/Docker-create
Dockerfiles and configuration components for HPC Singularity and cloud use
wtsi-ssg/image-creation-ci
wtsi-ssg/autoscale-etcd
wtsi-ssg/conda_samtools_development
This repository is to build samtools package from it's development branch using conda.
wtsi-ssg/cromwell_wr_openstack
wtsi-ssg/duplicity-backup.sh
Bash wrapper script for automated backups with duplicity supporting Amazon's S3 online storage as well as other storage destinations (ftp, rsync, sftp, local storage...).
wtsi-ssg/irods-mermaid-trees
wtsi-ssg/iseqfile
Drop-in replacement for a Sanger-specific imeta query for getting iRODS seq paths, to get the result fast.
wtsi-ssg/lsf-criu-integration
wtsi-ssg/mpirunp
Transparent wrapper for openmpi mpirun that finds good ports to use
wtsi-ssg/os-cluster-internal-config
wtsi-ssg/secure-lustre
wtsi-ssg/simple-image-builder
wtsi-ssg/snakemake-lsf
Sanger snakemake profile for running jobs on an LSF cluster
wtsi-ssg/sv-pipeline
wtsi-ssg/wrstat
A more reliable and efficient replacement for mpistat using wr.
wtsi-ssg/wtsi-ssg-lustre-jobstats