wum5
I'm a computational biologist at Editas Medicine, graduated from Indiana University Bloomington in 2019.
Editas MedicineCambridge, MA
Pinned Repositories
assemble-solanum-genome
This repository is to record the scripts to assemble and annotate some plant genomes in the genus Solanum. The scripts are aimed to be reproducible that can be used in other plant genome projects. We are still updating the pipeline!
I529-Group-Projects
A repository for my class group projects in INFO-529 (Bioinformatics Machine Learning)
INFO526_codes
Python script for my class project in INFO-526 (Applied Machine Learning)
JaltGenome
Raw scripts for de novo assembling a Jaltomata genome. Publication: Wu, M., Kostyun, J. and Moyle, L., 2018. Genome sequence of Jaltomata addresses rapid reproductive trait evolution and enhances comparative genomics in the hyper-diverse Solanaceae. Genome Biology and Evolution, evy274.
JaltGRN
Raw scripts for a following project "Regulatory Network"
JaltPhylo
Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.
solanum-gene-expression
A project to compare evolutionary rate of tissue-specific genes among closely related species
SolsexGenome
This is the scripts we used for performing the analyses in our research work on Solanum appediculatum genome and identification of sex determination region
wum5.github.io
Scripts to generate my homepage
cas-covid-mab-tracker
Python script using API of ClincialTrials.gov to retrieve therapeutic antibodies for the COVID-19 Antibody Tracker of the Chinese Antibody Society. Tracker: https://chineseantibody.org/covid-19-track/
wum5's Repositories
wum5/JaltGenome
Raw scripts for de novo assembling a Jaltomata genome. Publication: Wu, M., Kostyun, J. and Moyle, L., 2018. Genome sequence of Jaltomata addresses rapid reproductive trait evolution and enhances comparative genomics in the hyper-diverse Solanaceae. Genome Biology and Evolution, evy274.
wum5/JaltPhylo
Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.
wum5/assemble-solanum-genome
This repository is to record the scripts to assemble and annotate some plant genomes in the genus Solanum. The scripts are aimed to be reproducible that can be used in other plant genome projects. We are still updating the pipeline!
wum5/SolsexGenome
This is the scripts we used for performing the analyses in our research work on Solanum appediculatum genome and identification of sex determination region
wum5/INFO526_codes
Python script for my class project in INFO-526 (Applied Machine Learning)
wum5/solanum-gene-expression
A project to compare evolutionary rate of tissue-specific genes among closely related species
wum5/I529-Group-Projects
A repository for my class group projects in INFO-529 (Bioinformatics Machine Learning)
wum5/JaltGRN
Raw scripts for a following project "Regulatory Network"
wum5/wum5.github.io
Scripts to generate my homepage