wumed

wumed's Stars

• wu-yc/scMetabolism

  Quantifying metabolism activity at the single-cell resolution

  Language:R11347

• fun-science-club-ntu/SPACE

  Shiny Pan-cancer Accessible Chromatin Explorer (SPACE), a web server for analyzing chromatin accessibility on regulatory elements (ATAC-seq) in cancers. Citation: Wu, Y., Zhao, J., Zhu, H. et al. SPACE: a web server for linking chromatin accessibility with clinical phenotypes and the immune microenvironment in pan-cancer analysis. Cell Mol Immunol (2020). http://doi.org/10.1038/s41423-020-0416-9

  4

• fun-science-club-ntu/PET

  5

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R628147

• mdozmorov/HiC_data

  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

  17330

• JohnCoene/r-network-visualisation

  Handy list of network visualisation libraries for R

  112

• JohnCoene/waiter

  🕰️ Loading screens for Shiny

  Language:JavaScript49925

• menzi11/BullshitGenerator

  Needs to generate some texts to test if my GUI rendering codes good or not. so I made this.

  Language:JavaScript15.7k2.9k

• crazyhottommy/bioinformatics-one-liners

  Bioinformatics one liners from Ming Tang

  455129

• rstudio/shinythemes

  Themes for Shiny

  Language:R15278

• GuangchuangYu/cv

  Guangchuang Yu's CV

  Language:HTML4521

• KlugerLab/ALRA

  Imputation method for scRNA-seq based on low-rank approximation

  Language:R7319

• welch-lab/liger

  R package for integrating and analyzing multiple single-cell datasets

  Language:R38978

• ChrisLou-bioinfo/nsfc

  Language:R2

• liyu95/Deep_learning_examples

  Examples of using deep learning in Bioinformatics

  Language:Jupyter Notebook403129

• SydneyBioX/scMerge

  Statistical approach for removing unwanted variation from multiple single-cell datasets

  Language:R6713

• xiaochuanle/MECAT

  MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

  Language:C++10726

• tabdelaal/scRNAseq_Benchmark

  Bench-marking classification tools for scRNA-seq data

  Language:Python18356

• jzsh2000/seurat-shiny

  Language:R195

• hemberg-lab/scRNA.seq.course

  Analysis of single cell RNA-seq data course

  Language:TeX672360

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k458

• tallulandrews/scRNASeqPipeline

  Language:Perl11861

• ggjlab/scMCA

  Mouse cell atlas

  Language:R5918

• nyuhuyang/scRNAseq-SSCs

  Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

  Language:R112

• dviraran/SingleR

  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

  Language:HTML27298

• jianhong/trackViewer

  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

  Language:R6516

• gabrielodom/Bioc2019pathwayPCA

  Workshop repository for pathwayPCA at the 2019 Bioconductor conference

  Language:R53

• HGNC/get-gene-info

  Retrieving HGNC gene symbol reports (human genes only) via a list of gene IDs.

  Language:Perl1813

• Cobanoglu-Lab/EPEE

  Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression data.

  Language:Python164

• laurapeng/decoderr

  Single-sample compartment weight deconvolution for TCGA cancers

  Language:R21