/varscan_accessories

accessory scripts for processing varscan somatic/copynumber outputs.

Primary LanguagePythonMIT LicenseMIT

Command line accessory scripts for processing varscan somatic/copynumber outputs.

vs_format_converter.py converts varscan somatic output from vcf to snp and vice-versa

vs_indel_to_annovar.py converts varscan somatic indels to annovar input.

dnaCopyScan.R Takes output from varscan copynumber command (.copynumber) and performs CBS segmentation.