Pinned Repositories
ADAPTed
Identification of adapter sequences in nanopore sequencing
WarpDemuX
direct RNA nanopore sequencing barcode design and demultiplexing
cmp_benchmarks
Wrapper around google/benchmark/tools/compare.py
CovidStrategyCalculator
A standalone software to assess testing- and quarantine strategies for incoming travelers, contact person management and de-isolation
dmMIMESim
A tool for simulating the double-mutagenesis Mutational Interference Mapping Experiment
draco
Deconvolution of RNA Alternative COnformations
mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
slurm-job-tunnel
A utility to submit a SLURM job with specified resources and establish an SSH tunnel to the allocated compute node.
slurm-job-util
wf-cichlid
Nextflow workflow template repository
wvdtoorn's Repositories
wvdtoorn/wf-cichlid
Nextflow workflow template repository
wvdtoorn/cmp_benchmarks
Wrapper around google/benchmark/tools/compare.py
wvdtoorn/CovidStrategyCalculator
A standalone software to assess testing- and quarantine strategies for incoming travelers, contact person management and de-isolation
wvdtoorn/dmMIMESim
A tool for simulating the double-mutagenesis Mutational Interference Mapping Experiment
wvdtoorn/draco
Deconvolution of RNA Alternative COnformations
wvdtoorn/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
wvdtoorn/slurm-job-tunnel
A utility to submit a SLURM job with specified resources and establish an SSH tunnel to the allocated compute node.
wvdtoorn/slurm-job-util
wvdtoorn/nanoRMS
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., BioRxiv 2021)
wvdtoorn/rdkit
The official sources for the RDKit library
wvdtoorn/seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.