wvictor14/placental-villous-explants-scRNAseq

analysis on public scRNAseq data

title	author	date	output
README	Victor Yuan	March 25, 2019	html_document keep_md toc toc_depth toc_float theme true true 4 collapsed spacelab

Oxygen concentration and placental villous explant

For validating Beristain lab's oxygen project using public placental/decidual scRNAseq data.

Directory structure

Beristain - Villous explants oxygenPreeclampsia score
|   README.html
│   README.md                   
|   README.Rmd 
│   2019-03-19 currated scRNA-seq gene list.xlsx  <- Alex/Jenna's list of hits to validate
|
└───data
│   └───main
|           └───Roser Vento-Tormo       <- The original data obtained from repo 
|           └───interim                 <- Intermediate data that has been transformed
│           └───processed               <- The final, canonical data sets for analysis
|
└───R
|   └───00_data                   <- Downloading & loading data into R
|   └───10_qc_preprocess          <- Quality control and preprocessing data
|   └───20_analysis               <- Analyzing processed data
|
└───outs                          <- Figures and tables
└───reports                       <- powerpoints and documents made to show to others

Data

Analysis

References