wx904

Pinned Repositories

AlignQC
Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.
Language:Python0 1 00
awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
0 1 00
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
0 0 00
barcoding
Lima - Demultiplex Barcoded PacBio Samples
Language:R0 1 00
canu
A single molecule sequence assembler for genomes large and small.
Language:C++0 1 00
ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
0 1 00
CHM13
Ultra-long reads for CHM13 genome assembly
00
Demo
0 2 00
fiidau.github.io
Website for my tools and utilities
0 1 01
kallisto
Near-optimal RNA-Seq quantification
Language:C1 0 00

wx904's Repositories

wx904/kallisto
Near-optimal RNA-Seq quantification
Language:C1 0 00
wx904/awesome
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
0 1 00
wx904/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
0 0 00
wx904/barcoding
Lima - Demultiplex Barcoded PacBio Samples
Language:R0 1 00
wx904/canu
A single molecule sequence assembler for genomes large and small.
Language:C++0 1 00
wx904/ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
0 1 00
wx904/CHM13
Ultra-long reads for CHM13 genome assembly
00
wx904/Demo
0 2 00
wx904/fiidau.github.io
Website for my tools and utilities
0 1 01
wx904/genomewarp
GenomeWarp translates genetic variants from one genome assembly version to another.
Language:Java1 0
wx904/GEO
Language:R1 0
wx904/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Language:C++1 0
wx904/HumanDiseaseOntology
Repository for the Human Disease Ontology.
Language:Makefile1 0
wx904/IsoSeq
IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
wx904/IsoSeq_SA3nUP
Documentation and Developers Code Base for Iso-Seq SMRTAnalysis 3.x and beyond
0 0
wx904/Lab_2021
Repository for all the labs for Spring 2021
Language:HTML0 0
wx904/learning-bioinformatics-at-home
resources for learning bioinformatics
wx904/lihang-code
《统计学习方法》的代码实现
Language:Jupyter Notebook0 0
wx904/long-read-catalog
catalog for long-read sequencing tools
wx904/Louplus
wx904/NextDenovo
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
wx904/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
1 0
wx904/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
wx904/Python-100-Days
Python - 100天从新手到大师
wx904/readxl
Read excel files (.xls and .xlsx) into R 🖇
Language:C++1 0
wx904/shiyanlou-code
Language:Python2 0
wx904/SQANTI2
SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
Language:Python0 0
wx904/SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
Language:HTML0 0
wx904/STRetch
Method for detecting STR expansions from short-read sequencing data
wx904/tcga_example