wynnb

wynnb's Stars

• mahmoodlab/TITAN

  Multimodal Whole Slide Foundation Model for Pathology

  Language:Jupyter Notebook12413

• qupath/qupath-extension-stardist

  QuPath extension to run StarDist nucleus detection

  Language:Java366

• meta-llama/llama-models

  Utilities intended for use with Llama models.

  Language:Python5.4k904

• sanrishiguang/ChenleiLab_CODEX_HCC

  codes for article

  Language:R133

• Nanostring-Biostats/InSituType

  An R package for performing cell typing in SMI and other single cell data

  Language:HTML3111

• uw-bionlp/ReportMatcher

  Language:Jupyter Notebook2

• uw-bionlp/CAMIR

  1

• shuxiaoc/maxfuse

  Language:Jupyter Notebook4410

• hyu020/MoRad

  Language:R3

• hyu020/MeHEG

  Language:R2

• al2na/methylKit

  R package for DNA methylation analysis

  Language:R21797

• Yumo-Xie/ICIs-Cell-Atlas

  1

• ropensci/skimr

  A frictionless, pipeable approach to dealing with summary statistics

  Language:HTML1.1k80

• OHDSI/Legend

  An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).

  Language:R914

• ProfTuan/LCPO

  Long COVID Phenotype Ontology (LCPO)

  1

• overleaf/overleaf

  A web-based collaborative LaTeX editor

  Language:JavaScript14.5k1.5k

• WonyoungCho/MethylCIBERSORT

  Language:R2

• powellgenomicslab/scPred

  scPred package for cell type prediction from scRNA-seq data

  Language:R8116

• navinlabcode/copykit

  Toolkit for single-cell copy number analysis

  Language:R184

• kundajelab/chrombpnet

  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

  Language:Jupyter Notebook12534

• SAFEHR-data/omopcept

  omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.

  Language:R91

• OHDSI/dbt-synthea

  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

  Language:Python188

• KatherLab/STAMP

  Solid Tumor Associative Modeling in Pathology

  Language:Python4823

• microsoft/Swin-Transformer

  This is an official implementation for "Swin Transformer: Hierarchical Vision Transformer using Shifted Windows".

  Language:Python14.1k2.1k

• MIC-DKFZ/nnUNet

  Language:Python6.1k1.8k

• huggingface/pytorch-image-models

  The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNetV4, MobileNet-V3 & V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more

  Language:Python32.7k4.8k

• fahadshamshad/awesome-transformers-in-medical-imaging

  A collection of resources on applications of Transformers in Medical Imaging.

  1.2k184

• shopgoodwill-sniper/shopgoodwill-auction-sniper

  ShopGoodwill Sniper is a Goodwill Auction Bot for Windows and Mac that enables users to snipe their bids simultaneously at the last second of Shopgoodwill auctions on auto-pilot.

  Language:HTML15

• neuroidss/FreeEEG32-beta

  as FreeEEG32 plus alpha1.5 test passed, FreeEEG32 project changed to beta version

  Language:C11935

• ScaleBio/ScaleRna

  ScaleBio Single-cell RNA Nextflow Workflow

  Language:Python274