Mscanx Alignment e-value

[yuanning-li]

Hey, I got a quick question about the e-value cutoff for collinear genes.

For example, here is a list of syntenic blocks. All the genes have very low e-value from blast. How do you calculate the score and e-value from for the syntenic blocks?

Best,
Li

Alignment 2: score=150.0 e_value=0.057 N=3 HZ1&JO11 minus

2- 0: HZgenemark-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.107 JOYER156C 3e-111
2- 1: HZsnap_masked-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.62 JOYER155C 4e-172
2- 2: HZgenemark-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.130 JOYER154W 1e-47