wzthu
eXplainable AI (XAI) | deep learning | genomics | computational biology | bioinformatics
Fred Hutchinson Research CenterSeattle, USA
Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
DeepBIO
DeepSTF
DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
enrichTF
Bioconductor package enrichTF: Transcription Factors Enrichment Analysis
esATAC
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
esATAC-repo
NeuronMotif
NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
pipeFrame
Bioconductor/R package pipeFrame: Pipeline framework for bioinformatics in R
Rbowtie2
Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
zuoye
wzthu's Repositories
wzthu/esATAC
Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
wzthu/NeuronMotif
NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
wzthu/Rbowtie2
Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
wzthu/enrichTF
Bioconductor package enrichTF: Transcription Factors Enrichment Analysis
wzthu/zuoye
wzthu/pipeFrame
Bioconductor/R package pipeFrame: Pipeline framework for bioinformatics in R
wzthu/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
wzthu/DeepBIO
wzthu/DeepSTF
DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
wzthu/esATAC-repo
wzthu/FactorNet
A deep learning package for predicting TF binding
wzthu/iDeepE
inferring RBP binding sites and motifs using local and global CNNs
wzthu/jseqlogo
Sequence logos in pure Javascript
wzthu/keras-genomics
Genomics layers for Keras 2
wzthu/mman-win32
mman library for Windows. mirror of https://code.google.com/p/mman-win32/
wzthu/NeuronMotif-demo
wzthu/NeuronMotif_BD-10.github.io
wzthu/NeuronMotif_BD-5.github.io
wzthu/NeuronMotif_DD-10.github.io
wzthu/NeuronMotif_DeepSEA.github.io
wzthu/NeuronMotifBasset.github.io
wzthu/notebooks
:green_book: Jupyter notebooks for demo/projects, now that github supports them
wzthu/NucleoATAC
nucleosome calling using ATAC-seq
wzthu/python3-cookbook
《Python Cookbook》 3rd Edition Translation
wzthu/resume
An elegant \LaTeX\ résumé template
wzthu/RWebLogo
RWebLogo is a wrapper R package for the popular WebLogo that allows plotting of customised sequence logos.
wzthu/wzthu.github.io