Reads files: fastq
Genome: fasta
Annotation: gtf
0 QC fastqc & Trimmomatic
2 featurecounts quantification
5 Visualization -R (heatmap, PCA, correlation, volcano plot)
RNA sequencing: the teenage years
Understand Fastqc modules
Trimmomatic Manual
DESeq2 tutorial
STAR
Manul of STAR
Featurecounts manual
WGCNA