A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
A Cookiecutter template for a Snakemake pipeline.
- makes creating new Snakemake pipelines easy and standardized.
Generate a new Snakemake pipeline:
$ cookiecutter https://github.com/xguse/cookiecutter-snakemake-analysis-pipeline.gitIf you have differences in your preferred setup, I encourage you to fork this to create your own version. If you do, consider submitting a pull request to share the love.