ICD
This is a tiny repo containing ipynb files and ICD model-related files.
Running simulations on ICD models is possible if 3 files have been previously downloaded and hence, are accessible from the ipynb file working directory. Every simulation need a model description file (.bnd) a model config file (.cfg) and the population update file (.upp).
Use with binder
Use with docker
To run this notebook using the built docker image, run :
docker run -p 8888:8888 -d sysbiocurie/icd
Use with conda
To build the conda environment :
conda create -n icd -c colomoto pymaboss notebook seaborn
To activate it :
conda activate icd
To run the notebook:
jupyter notebook