Pinned Repositories
aozhangchina.github.io
My GitHub Site
FunGraph
A statistical protocol to reconstruct omnigenic multilayer interactome networks for complex traits
GenomicSEM
R-package for structural equation modeling based on GWAS summary data
GMAT-1
hiblup
:surfer: HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction
JWASr
R wrapper for JWAS, with shiny GUI app inside.
MegaLMM
R package for fitting high-dimensional multivariate linear mixed effect models
peer
寻找影响基因表达量的影响因子，用于TWAS分析中
shiny_learning
TGMI
Triple Gene Mutual Interaction
xiahui625649's Repositories
xiahui625649/shiny_learning
xiahui625649/GenomicSEM
R-package for structural equation modeling based on GWAS summary data
xiahui625649/MegaLMM
R package for fitting high-dimensional multivariate linear mixed effect models
xiahui625649/asrgenomics
xiahui625649/BCClong
贝叶斯一致性聚类（重复抽样多次聚类，评估聚类结果可靠性），包括各种类型数据，如纵向性状等
xiahui625649/blupADC
blupADC:An useful tool for animal and plant breeding
xiahui625649/CFVisual
绘制基因家族中Motif和基因结构一张图
xiahui625649/ClusterGVis
One-step to Cluster and Visualize Gene Expression Matrix基因表达趋势分析和富集分析
xiahui625649/CProtMEDIAS
xiahui625649/d2l-zh-
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。
xiahui625649/GMMAT
GWAS基于广义混合线性模型Generalized linear Mixed Model Association Tests
xiahui625649/gradient-forest-for-delineating-seed-and-breeding-zones
This is the code for manuscript "Using landscape genomics to delineate seed and breeding zones for lodgepole pine" by Yu et al., 2022, New Phytologist
xiahui625649/growthPheno
生长性状
xiahui625649/gwsem
Genome-wide Structural Equation Modeling
xiahui625649/introduction_to_gwas
各种不同GWAS模型脚本
xiahui625649/IPLGP
xiahui625649/lfelipe-ferrao.github.io
Genetic Data Analysis for Plant and Animal Breeding
xiahui625649/MingPCACluster
EM高斯混合模型聚类
xiahui625649/OrdinalGWAS.jl
Genome-wide association studies (GWAS) for ordered categorical phenotypes using proportional odds model or ordred Probit model.
xiahui625649/pannagram
多基因组比对
xiahui625649/permGWAS
Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions
xiahui625649/Plant-LncRNA-pipline
植物LncRNA分析工具
xiahui625649/RNAGlass
Identify and quantify mobile mRNAs in grafted plants
xiahui625649/RRM-and-FAMM-asreml-two-step
随机回归模型在纵向性状中应用 contains the R codes to model the genotype by harvest interaction using random regression models (RRM) and Factor Analytic Mixed Model (FAMM)
xiahui625649/rTASSEL
R front-end for TASSEL
xiahui625649/TO-GCN
时间序列基因共表达网络Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
xiahui625649/topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
xiahui625649/TSDFGS
Training set determination for genomic selection.
xiahui625649/wekits
SNP和SSR引物批量设计Wheat Bioinformatic Toolkits
xiahui625649/workshop-tidyverse
Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!