xiaoyezao

Pinned Repositories

Bioinformatics-Training
Bioinformatics training resources
Language:R00
bioruby-maf
MAF parser for BioRuby
Language:Ruby00
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
Language:Jupyter Notebook00
GENESPACE
genespace from jtlovell/GENESPACE
Language:R00
MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Language:C++00
odp
oxford dot plots
Language:Python0 0 00
PHYRN
Phylogenetic Reconstruction in the "Twilight-Zone" of Sequence Similarity
Language:Python00
Pollination_networks
R scripts and data for Doré et al., 2020 - Relative effects of anthropogenic pressures, climate, and sampling design on the structure of pollination networks at the global scale.
Language:R00
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
Language:Perl00
rust-mdbg
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
Language:Rust0 0 00

xiaoyezao's Repositories

xiaoyezao/Bioinformatics-Training
Bioinformatics training resources
Language:R00
xiaoyezao/bioruby-maf
MAF parser for BioRuby
Language:Ruby00
xiaoyezao/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
Language:Jupyter Notebook00
xiaoyezao/GENESPACE
genespace from jtlovell/GENESPACE
Language:R00
xiaoyezao/MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Language:C++00
xiaoyezao/odp
oxford dot plots
Language:Python0 0 00
xiaoyezao/PHYRN
Phylogenetic Reconstruction in the "Twilight-Zone" of Sequence Similarity
Language:Python00
xiaoyezao/Pollination_networks
R scripts and data for Doré et al., 2020 - Relative effects of anthropogenic pressures, climate, and sampling design on the structure of pollination networks at the global scale.
Language:R00
xiaoyezao/ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
Language:Perl00
xiaoyezao/rust-mdbg
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly
Language:Rust0 0 00
xiaoyezao/SIBBiodiversityBioinformatics2023
course for OMA phylogenomics
xiaoyezao/SubPhaser
Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
xiaoyezao/SynNet-Pipeline
Workflow for Building Microsynteny Networks
xiaoyezao/SynNet-Py
An adapted SynNet-Pipeline from https://github.com/zhaotao1987/SynNet-Pipeline
Language:Python
xiaoyezao/TAPER
Removing misaligned regions