Pinned Repositories
APTARS
Analysis of Pacbio TARgeted Sequencing
ASCENT
rMATs and IsoformSwitchAnalyeR workflow for multi-group multi-contrasts scenarios
ATAC-Seq-pipeline-based-on-Encode
BAMixChecker
BAMixChecker: A fast and efficient tool for sample matching checkup
bcell_pipeline
biocode
Bioinformatics code libraries and scripts
Bulk-RNA-scripts
Germline_VariantCalling
NeoAg_pre
VHH_nanobody
xiaoyulei0406's Repositories
xiaoyulei0406/APTARS
Analysis of Pacbio TARgeted Sequencing
xiaoyulei0406/ASCENT
rMATs and IsoformSwitchAnalyeR workflow for multi-group multi-contrasts scenarios
xiaoyulei0406/Bulk-RNA-scripts
xiaoyulei0406/Bulk-RNASeq-WDL
Written by WDL
xiaoyulei0406/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
xiaoyulei0406/NeoAg_pre
xiaoyulei0406/VHH_nanobody
xiaoyulei0406/cellDancer
Predict RNA velocity through deep learning
xiaoyulei0406/Cogent
Coding Genome Reconstruction using Iso-Seq data
xiaoyulei0406/copydetect
Code plagiarism detection tool
xiaoyulei0406/EBV
public repository for the Flemington lab
xiaoyulei0406/hap-eval
A VCF comparison engine for structual variant benchmarking
xiaoyulei0406/hotspot-mutation
xiaoyulei0406/isoseq-pipeline_ref
pipeline for working with PacBio long read RNA data using the outputs of isoseq3
xiaoyulei0406/isoseq_refs
xiaoyulei0406/lake
xiaoyulei0406/Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
xiaoyulei0406/ML_RCCstaging
xiaoyulei0406/ML_TCR
xiaoyulei0406/mutation-database
Extract mutation from PDF files
xiaoyulei0406/neoantigENcyclopedia
data merging and prediction pipeline for neoantigen detection
xiaoyulei0406/oncokb-annotator
Annotates variants in MAF with OncoKB annotation.
xiaoyulei0406/Pacbio-Alternative-Splicing
xiaoyulei0406/Pacbio_Analysis
Third-generation single cell sequencing (Pacbio) analysis pipeline.
xiaoyulei0406/PBFLIP
xiaoyulei0406/QuAISAR_singularity
Containerized version of QuAISAR
xiaoyulei0406/ref_file_scripts
xiaoyulei0406/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
xiaoyulei0406/somaticseq
An ensemble approach to accurately detect somatic mutations using SomaticSeq
xiaoyulei0406/sv-callers
Snakemake-based workflow for detecting structural variants in genomic data