Pinned Repositories
aacr_interactome
AACR Interactome
AMPAD_Heatmap
Shiny app for AMP-AD heatmap
ascat
ASCAT copy number R package
challengeutils
Synapse challenge utility functions
cvat
Computer Vision Annotation Tool (CVAT) is a web-based tool which helps to annotate video and images for Computer Vision algorithms
d3-hierarchy
2D layout algorithms for visualizing hierarchical data.
dermalNF
Code designed to annotate and process CTF-funded dermal NF samples. All available data and key analysis steps uploaded to http://www.synapse.org/dermalNF
docker-baseqDrops
Dockerization of baseqDrops
dockstore-workflow-mageck
NTAP_DataExplore_shinyApp
xindiguo's Repositories
xindiguo/docker-baseqDrops
Dockerization of baseqDrops
xindiguo/NTAP_DataExplore_shinyApp
xindiguo/aacr_interactome
AACR Interactome
xindiguo/challengeutils
Synapse challenge utility functions
xindiguo/cvat
Computer Vision Annotation Tool (CVAT) is a web-based tool which helps to annotate video and images for Computer Vision algorithms
xindiguo/d3-hierarchy
2D layout algorithms for visualizing hierarchical data.
xindiguo/dockstore-workflow-mageck
xindiguo/garnett
Automated cell type classification
xindiguo/genie-bpc-quac-wrapper
Wrapper for the GENIE BPC Quality Assurance Checklist for monitoring and notifications
xindiguo/genie-project-requests
Stand-alone scripts for quick checks or tasks for GENIE
xindiguo/GENIE-Sponsored-Projects
This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
xindiguo/genie_requests
Scripts for quick checks for GENIE
xindiguo/metanetworkSynapse
xindiguo/NTAP
This repository contains various analyses performed for the Neurofibromatosis Therapeutics Acceleration Program (NTAP).
xindiguo/oncotree
xindiguo/PSON
Physical Sciences Oncology Network
xindiguo/pythonSynapseUtils
Helper Scripts to ease routine synapse python client oriented tasks
xindiguo/sandbox-infra
Automation for the Sage AWS org-sagebase-sandbox account
xindiguo/sandbox-provisioner
An service to auto provision resources on AWS scicomp
xindiguo/scicomp-infra
xindiguo/scicomp-provisioner
An service to auto provision resources
xindiguo/scRNAseq_Benchmark
Bench-marking classification tools for scRNA-seq data
xindiguo/single-cell-seq
For all things related to single cell sequencing
xindiguo/single-cell-seq-cwl
Tools and workflows for single cell RNAseq
xindiguo/synAnnotationUtils
xindiguo/synapse-workflow-cwl-tools
CWL tools for wrapping other tools with Synapse download and upload steps.
xindiguo/synapseAnnotations
Sage Bionetworks derived standards for annotating content in Synapse.
xindiguo/synapseDocs
xindiguo/synapsePythonClient
Programmatic interface to Synapse services for Python
xindiguo/Tumor-Deconvolution-Challenge