mdseqpos python package Authors: Len Taing, Ying Lei, Cliff Myers, Tao Liu, Ma Jian, et al Contact: lentaing@jimmy.harvard.edu URL:'http://cistrome.dfci.harvard.edu/ap' INSTALLATION INSTRUCTIONS: 1. install package dependencies: a. jinja2 b. ghostscript c. numpy v. 1.3.0 or greater 2. copy lib/settings.py.example to lib/settings.py 3. specify where your UCSC assemblies are by modifying ASSEMBLY_DIR and BUILD_DICT in lib/settings.py 4. run version_updater: e.g. $ ./version_updater.py 5. as sudo, type: python setup.py install // below is my note for internal users. // if you want install it on brca for your own. step 1-4 is the same. 5. change NUMPY_PATH in setup.py to: os.path.join(sys.prefix,"lib","python"+sys.version[:3], 'numpy') 6. python setup.py install --prefix=<your path> 7. modify PYTHONPATH if necessary