Pinned Repositories
af2_multistate_hallucination
AF2 based MCMC Hallucination Script based on Wicky, Milles, Courbet et al 2022
af2seq
alphafold
Open source code for AlphaFold.
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
annotated_deep_learning_paper_implementations
🧑🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
apbs
Software for biomolecular electrostatics and solvation calculations
BNP-Track
books
一些常见的书籍pdf或者视频
chroma
A generative model for programmable protein design
cs230-code-examples
Code examples in pyTorch and Tensorflow for CS230
xinluzhu's Repositories
xinluzhu/alphafold
Open source code for AlphaFold.
xinluzhu/alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
xinluzhu/annotated_deep_learning_paper_implementations
🧑🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
xinluzhu/chroma
A generative model for programmable protein design
xinluzhu/DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
xinluzhu/dl_binder_design
xinluzhu/esm
xinluzhu/evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
xinluzhu/finches
FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
xinluzhu/FoldFlow
Code release for our recent paper "SE(3)-Stochastic Flow Matching for Protein Backbone Generation" https://arxiv.org/abs/2310.02391
xinluzhu/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
xinluzhu/frame-flow
Fast protein backbone generation with SE(3) flow matching.
xinluzhu/ILEE_CSK
xinluzhu/netron
Visualizer for neural network, deep learning and machine learning models
xinluzhu/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
xinluzhu/ProteinMPNN
Code for the ProteinMPNN paper
xinluzhu/pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
xinluzhu/PyTorch-Tutorial-2nd
《Pytorch实用教程》（第二版）无论是零基础入门，还是CV、NLP、LLM项目应用，或是进阶工程化部署落地，在这里都有。相信在本书的帮助下，读者将能够轻松掌握 PyTorch 的使用，成为一名优秀的深度学习工程师。
xinluzhu/pytorch_geometric
Graph Neural Network Library for PyTorch
xinluzhu/PyTorch_Tutorial-tingsong
《Pytorch模型训练实用教程》中配套代码
xinluzhu/rf_diffusion_all_atom
Public RFDiffusionAA repo
xinluzhu/RoseTTAFold-All-Atom
xinluzhu/se3-transformer-public
code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503
xinluzhu/TARDIS-public
Public releases of TARDIS
xinluzhu/The-Art-of-Linear-Algebra-zh-CN
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone", 线性代数的艺术中文版, 欢迎PR.
xinluzhu/trackpy
Python particle tracking toolkit
xinluzhu/udlbook
Understanding Deep Learning - Simon J.D. Prince
xinluzhu/Umol
Protein-ligand structure prediction
xinluzhu/walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
xinluzhu/x-transformers
A simple but complete full-attention transformer with a set of promising experimental features from various papers