About
biom2lefse is a script to convert a Biom-format file into one that is compatible with LefSe. The format for LefSe is different than the Biom format or the old Qiime OTU table formats.
This software is issued under the MIT License and is provided AS IS.
Example
git clone https://github.com/gditzler/DataCollections.git
biom2lefse -i DataCollections/Caporaso/caporaso-gut.biom -m DataCollections/Caporaso/caporaso-gut.txt -f SEX -o caporaso-lefse.txt