Pinned Repositories
AmpliCI
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
AmpliCI
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
AmpliCI-UMI
AmpliCI with UMI information
bioconda-recipes
Conda recipes for the bioconda channel.
furo
A clean customizable documentation theme for Sphinx
HMM-model-for-Mi-seq
Baum Welch algorithm to solve the HMM model for Mi-seq data
Microbiome-16S
R codes for statistical analysis on microbiome 16S Amplicon Data
MIF
R codes for statistical analysis on whole-slide multiplexed imaging data for melanoma patients.
SpaTopic
An R package for fast topic inference to identify tissue architecture in multiplexed images
topic_modeling
Latent Dirichlet Allocation with application on Longitudinal Flow Cytometry Data
xiyupeng's Repositories
xiyupeng/SpaTopic
An R package for fast topic inference to identify tissue architecture in multiplexed images
xiyupeng/topic_modeling
Latent Dirichlet Allocation with application on Longitudinal Flow Cytometry Data
xiyupeng/Microbiome-16S
R codes for statistical analysis on microbiome 16S Amplicon Data
xiyupeng/AmpliCI-UMI
AmpliCI with UMI information
xiyupeng/MIF
R codes for statistical analysis on whole-slide multiplexed imaging data for melanoma patients.
xiyupeng/AmpliCI
AmpliCI, a model-based algorithm for denoising Illumina amplicon data.
xiyupeng/bioconda-recipes
Conda recipes for the bioconda channel.
xiyupeng/furo
A clean customizable documentation theme for Sphinx
xiyupeng/HMM-model-for-Mi-seq
Baum Welch algorithm to solve the HMM model for Mi-seq data
xiyupeng/kallisto
Near-optimal RNA-Seq quantification
xiyupeng/LDA_examples
This folder contains all files for the github pages.
xiyupeng/MCMC
MCMC for Hierarchical possion models
xiyupeng/metacell
Metacell - Single-cell mRNA Analysis
xiyupeng/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
xiyupeng/motif
Use Branch And Bound Strategy to find motif of several DNA sequences
xiyupeng/raw_loess
xiyupeng/RcppArmadillo
Rcpp integration for the Armadillo templated linear algebra library
xiyupeng/rmath
The R Standalone Math Library with modern CMake support
xiyupeng/rna-seq-tsne
The art of using t-SNE for single-cell transcriptomics
xiyupeng/SSCO
Find the genes involved in start-stop codon overlaping in prokaryotic genome