xjtu-omics

Pinned Repositories

ChineseQuartetGenome
Genome assembly and variant benchmarks for Chinese Quartet
Language:Python3 4 00
D2
D2: Compute DNA Density and Distance to nuclear periphery.
Language:Python0 3 00
HiCAT
HiCAT new project
Language:Python27 2 112
IAGS
Language:Python16 2 64
Mako
A graph-based pattern growth approach for CSV discovery
Language:Java9 4 41
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Language:C++103 5 7423
msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
Language:Python20 4 42
Papaver-Genomics
The genomic data for Papaver species
Language:Visual Basic 6.03 5 05
STMiner
Build the relationship between SVGs
Language:Python12 1 02
SVision
Detecting genome structural variants with deep learning in single molecule sequencing
Language:Python101 6 3810

xjtu-omics's Repositories

xjtu-omics/msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
Language:C++103 5 7423
xjtu-omics/SVision
Detecting genome structural variants with deep learning in single molecule sequencing
Language:Python101 6 3810
xjtu-omics/HiCAT
HiCAT new project
Language:Python27 2 112
xjtu-omics/msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
Language:Python20 4 42
xjtu-omics/IAGS
Language:Python16 2 64
xjtu-omics/STMiner
Build the relationship between SVGs
Language:Python12 1 02
xjtu-omics/Mako
A graph-based pattern growth approach for CSV discovery
Language:Java9 4 41
xjtu-omics/gCAnno
Language:Python4 1 02
xjtu-omics/IAG
Language:Python4 2 02
xjtu-omics/ChineseQuartetGenome
Genome assembly and variant benchmarks for Chinese Quartet
Language:Python3 4 00
xjtu-omics/Papaver-Genomics
The genomic data for Papaver species
Language:Visual Basic 6.03 5 05
xjtu-omics/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
Language:C3 3 01
xjtu-omics/processDrimm
The input file generator for [IAGS](https://github.com/xjtu-omics/IAGS)
Language:C#3 0 0
xjtu-omics/MCscanX2Band
Language:Java2 4 01
xjtu-omics/ArabidopsisAssem
Arabidopsis thaliana high-quality genome assembly
1 3 0
xjtu-omics/cluster
instruction of Ye-Lab HPC
1 4 01
xjtu-omics/HiCAT-human
HiCAT-human
Language:Python1 0 0
xjtu-omics/LTR_Stream
Language:Python1 4 01
xjtu-omics/D2
D2: Compute DNA Density and Distance to nuclear periphery.
Language:Python0 3 00
xjtu-omics/2023-YuXu-Chromatin-accessibility-landscape-of-Papaver-somniferum_bak
2023, graduated student, YuXu's work
0 0
xjtu-omics/2023-YuXu-poppy_subgenome
2023, graduated student, YuXu's work about poppy subgenome
0 0
xjtu-omics/BSLtool
Build satellite library
Language:C++0 0
xjtu-omics/Cross_landscape_HOR_clustering
Init
Language:Python0 0
xjtu-omics/Four_Papaver_HiFi
The analysis scripts used in four Papaver HiFi data analysis projects
Language:Python3 0
xjtu-omics/GS_Image
GastricImages Recognition
Language:Python1 0
xjtu-omics/HRD
change to TAI
Language:R3 0
xjtu-omics/IAGS_AUTO
The project is based on IAGS and automates processes
Language:Python0 1
xjtu-omics/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
Language:C++1 0
xjtu-omics/opium_poppy_isoseq
Language:Python5 0
xjtu-omics/SARS-CoV-2_graph_genome
Language:R4 0