xmao
Bioinformatics Scientist and Computer Engineer. Proficient in Python, R, Bash, Rust, C/C++, Golang, Javascript and Java.
Houston, TX
Pinned Repositories
cbioportal
cBioPortal for MD Anderson Cancer Center
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
iGUIDE
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
kit
KIT (Keep It sTupid): Yet another keyword-based manager of small command line tools
kobas
KOBAS: a command line tool for identifying significant pathways from genomic data
monaco-nerd-fonts
monaco font patched with extra nerd glyphs
python-oneliner
Module for practical Python one-liners
samkit
Some utility functions to manipulate SAM/BAM files
seurat-wrappers
Community-provided extensions to Seurat
xmao's Repositories
xmao/kobas
KOBAS: a command line tool for identifying significant pathways from genomic data
xmao/kit
KIT (Keep It sTupid): Yet another keyword-based manager of small command line tools
xmao/samkit
Some utility functions to manipulate SAM/BAM files
xmao/cbioportal
cBioPortal for MD Anderson Cancer Center
xmao/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
xmao/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
xmao/iGUIDE
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
xmao/monaco-nerd-fonts
monaco font patched with extra nerd glyphs
xmao/python-oneliner
Module for practical Python one-liners
xmao/seurat-wrappers
Community-provided extensions to Seurat
xmao/STMpaper2020
Code for STM paper
xmao/Subsystem
Cross-platform subsystem of console environment on windows, mac and linux.
xmao/xmao.github.io
xmao/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
xmao/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
xmao/poolr
Package for pooling the results from (dependent) tests