xmeng

Bioinformatics Scientist at Stanford University

Stanford University

Pinned Repositories

isolateR
Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries
Language:R10 1 121
nf-reads-profiler
Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.
Language:Nextflow4 5 01
ninjaMap
Compute strain abundance in a defined microbial community
Language:Python9 4 22
PUPpy
Pipeline to design taxon-specific primes in defined bacterial communities.
Language:Python14 2 124
devops
training
0 1 00
gaet
Language:Shell00
microbiome-data-analysis
Contains docker images and scripts to perform upstream bioinformatic analysis for CZ Biohub Microbiome Initiative samples.
Language:Python0 0 01
ninjaMap
[BETA] Abundance estimator at strain level resolution for microbial communities.
Language:Python0 0 00
quast
Language:Shell0 1 00
spades
Language:Shell0 1 00

xmeng's Repositories

xmeng/devops
training
0 1 00
xmeng/gaet
Language:Shell00
xmeng/microbiome-data-analysis
Contains docker images and scripts to perform upstream bioinformatic analysis for CZ Biohub Microbiome Initiative samples.
Language:Python0 0 01
xmeng/ninjaMap
[BETA] Abundance estimator at strain level resolution for microbial communities.
Language:Python0 0 00
xmeng/quast
Language:Shell0 1 00
xmeng/spades
Language:Shell0 1 00