Failure to build and install with pip
catbyte-io opened this issue · 7 comments
xmlsec fails to build with command pip install xmlsec or pip install python3-saml in virtual environment in codespaces docker container.
Python version: Python 3.12
virtual environment: venv
My distribution version:
VERSION="22.04.3 LTS (Jammy Jellyfish)"
requested versions:
xmlsec 1.3.13
libxmlsec1 1.2.33-1build2
libxml2 2.9.13+dfsg-1ubuntu0.3
pkg-config --cflags xmlsec1 output:
-D__XMLSEC_FUNCTION__=__func__ -DXMLSEC_NO_SIZE_T -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_GOST2012=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_CRYPTO_OPENSSL=1 -I/usr/include/xmlsec1 -I/usr/include/libxml2
Error message:
Collecting python3-saml
Downloading python3_saml-1.16.0-py3-none-any.whl.metadata (1.3 kB)
Collecting lxml!=4.7.0,>=4.6.5 (from python3-saml)
Downloading lxml-4.9.3-cp312-cp312-manylinux_2_28_x86_64.whl.metadata (3.8 kB)
Collecting isodate>=0.6.1 (from python3-saml)
Downloading isodate-0.6.1-py2.py3-none-any.whl (41 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.7/41.7 kB 3.4 MB/s eta 0:00:00
Collecting xmlsec>=1.3.9 (from python3-saml)
Downloading xmlsec-1.3.13.tar.gz (64 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 64.6/64.6 kB 16.4 MB/s eta 0:00:00
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting six (from isodate>=0.6.1->python3-saml)
Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Downloading python3_saml-1.16.0-py3-none-any.whl (76 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 76.2/76.2 kB 223.7 MB/s eta 0:00:00
Downloading lxml-4.9.3-cp312-cp312-manylinux_2_28_x86_64.whl (8.0 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.0/8.0 MB 180.3 MB/s eta 0:00:00
Building wheels for collected packages: xmlsec
Building wheel for xmlsec (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for xmlsec (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [28 lines of output]
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-312
creating build/lib.linux-x86_64-cpython-312/xmlsec
copying src/xmlsec/constants.pyi -> build/lib.linux-x86_64-cpython-312/xmlsec
copying src/xmlsec/template.pyi -> build/lib.linux-x86_64-cpython-312/xmlsec
copying src/xmlsec/tree.pyi -> build/lib.linux-x86_64-cpython-312/xmlsec
copying src/xmlsec/__init__.pyi -> build/lib.linux-x86_64-cpython-312/xmlsec
copying src/xmlsec/py.typed -> build/lib.linux-x86_64-cpython-312/xmlsec
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building 'xmlsec' extension
creating build/temp.linux-x86_64-cpython-312
creating build/temp.linux-x86_64-cpython-312/tmp
creating build/temp.linux-x86_64-cpython-312/tmp/pip-install-xv3vt6eb
creating build/temp.linux-x86_64-cpython-312/tmp/pip-install-xv3vt6eb/xmlsec_6c89e061ef61437b88afa49c2c65fd06
creating build/temp.linux-x86_64-cpython-312/tmp/pip-install-xv3vt6eb/xmlsec_6c89e061ef61437b88afa49c2c65fd06/src
clang -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -ferror-limit=1 -gdwarf-4 -ggdb3 -O0 -std=c11 -Wall -Werror -Wextra -Wno-gnu-folding-constant -Wno-sign-compare -Wno-unused-parameter -Wno-unused-variable -Wno-unused-but-set-variable -Wshadow -fPIC -D__XMLSEC_FUNCTION__=__func__ -DXMLSEC_NO_SIZE_T -DXMLSEC_NO_GOST=1 -DXMLSEC_NO_GOST2012=1 -DXMLSEC_NO_CRYPTO_DYNAMIC_LOADING=1 -DXMLSEC_CRYPTO_OPENSSL=1 -DMODULE_NAME=xmlsec -DMODULE_VERSION=1.3.13 -I/usr/include/xmlsec1 -I/usr/include/libxml2 -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes/libexslt -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes/__pycache__ -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes/libxml -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes/libxslt -I/tmp/pip-build-env-76x9tw6b/overlay/lib/python3.12/site-packages/lxml/includes/extlibs -I/workspaces/github/Catbyte/.venv/include -I/usr/local/include/python3.12 -c /tmp/pip-install-xv3vt6eb/xmlsec_6c89e061ef61437b88afa49c2c65fd06/src/constants.c -o build/temp.linux-x86_64-cpython-312/tmp/pip-install-xv3vt6eb/xmlsec_6c89e061ef61437b88afa49c2c65fd06/src/constants.o -g -std=c99 -fPIC -fno-strict-aliasing -Wno-error=declaration-after-statement -Werror=implicit-function-declaration -Os
/tmp/pip-install-xv3vt6eb/xmlsec_6c89e061ef61437b88afa49c2c65fd06/src/constants.c:83:10: error: missing field 'get' initializer [-Werror,-Wmissing-field-initializers]
{NULL} /* Sentinel */
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
2 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for xmlsec
Failed to build xmlsec
ERROR: Could not build wheels for xmlsec, which is required to install pyproject.toml-based projects
I uploaded here for Python 3.12:
https://github.com/mymy47/python-builds-for-windows/releases
@catbyte-io any hint here? Did you manage to solve it?
I guess it's related to #254 which the fix has already been merged. You just have to wait for the next release.
You can also find the workaround solution in the comments if you don't want to wait :)
@gabrielakuhn, The issue was experienced when I was installing to pip in a .venv environment in Codespaces. However, when I spin up my docker containers within the environment, there are no issues. Since I don't have a need to run it in only a .venv environment, the issue can be closed unless anyone wants to investigate further. Thank you everyone.
@mxamin any estimated time of arrival for the next release? An rough estimate would be very helpful. Thanks