Pinned Repositories
ANCOM
Code and documentation for ANCOM
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
Bleuvenetal2019
Jupyter Notebook used for bar-seq library analysis in Bleuven et al 2019
C-score_analysis
co-occurrence
R scripts for performing co-occurrence analyses
Co-occurrence_Network_Analysis
R and python scripts for correlation-based network analysis
CoDaSeq
Functions for compositional analysis of high throughput sequencing
Code_and_data_OverallEcosystemStability
Cohesion
Updates and maintenance of the Cohesion method for quantifying connectivity in microbial communities
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
xphab's Repositories
xphab/Co-occurrence_Network_Analysis
R and python scripts for correlation-based network analysis
xphab/ANCOM
Code and documentation for ANCOM
xphab/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
xphab/Bleuvenetal2019
Jupyter Notebook used for bar-seq library analysis in Bleuven et al 2019
xphab/C-score_analysis
xphab/CoDaSeq
Functions for compositional analysis of high throughput sequencing
xphab/Code_and_data_OverallEcosystemStability
xphab/Cohesion
Updates and maintenance of the Cohesion method for quantifying connectivity in microbial communities
xphab/dada2
Accurate sample inference from amplicon data with single nucleotide resolution
xphab/diamond
Accelerated BLAST compatible local sequence aligner.
xphab/docs
xphab/EasyMetagenome
Easy Metagenome Pipeline 2019 (1.0)
xphab/fastspar
Rapid and scalable correlation estimation for compositional data
xphab/freess
免费ss账号 免费shadowsocks账号 (长期更新)
xphab/ggcor
Extended tools for correlation analysis and visualization.
xphab/Global-bacterial-diversity-in-WWTPs
xphab/iCAMP1
Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
xphab/phylocom
Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic
xphab/PracticalLombScargle
Source for my paper, Understanding the Lomb-Scargle Periodogram
xphab/qiime2
Official repository for the QIIME 2 framework.
xphab/Rare-and-abundant-bacteria-
Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils
xphab/RiceSeedMicrobiome
Plotting and analysis for rice seed microbiome
xphab/s-plot
A simple plot library
xphab/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
xphab/Stability-of-multitrophic-communities-under-habitat-loss
Simulation code for manuscript published in Nature Communications.
xphab/tech_tips
Technology tips
xphab/tong-s_must_read_list
papers read list about biology, bioinformatics, and others
xphab/visreg
Visualization of regression functions
xphab/WaveletCombinatorics
xphab/xphab
Config files for my GitHub profile.