xryanglab/RiboCode

remove PCR duplicate

yx-xu opened this issue · 2 comments

yx-xu commented

Hi!
I'm sorry to bother you. I followed Ribocoed workflow, but I don't know whether need to remove PCR duplicate after STAR alignment. Could you give me some suggestions? Thank you very much!

If you only want to identify the novel translating ORFs, PCR duplication removal is not necessary.

PCR duplications might influence the quantification of the translational level of ORFs。

yx-xu commented

Get it! Thanks for your reply!