Copyright (c) Dr. Adam Streck 2016
Distributed under the MIT open-source license
Used to align the timeline of datafiles based on the highest peak found after a certain timepoint.
The input files must contain two tab-separated columns of values.
- The time of measurement.
- The measurement value.
For example:
0.003333333333332291 0.0052799997
0.006666666666665625 0.00533
0.009999999999998958 0.00542
0.013333333333332292 0.00555
...
Notes:
- The data are shifted w.r.t. a
template
file that must be provided by the user. - The tool does not override the original data. The results are stored in the
output
location. - Should the value be shifted before 0 time, it gets ignored.
Requires Python 2.7 or Python 3 or newer.
python HPACED.py [-h] [--timepoint TIMEPOINT] [--location LOCATION]
[--output OUTPUT] [--extension EXTENSION]
template
positional arguments:
template the name of the file found in the location based on
which the files are aligned
optional arguments:
-h, --help show this help message and exit
--timepoint TIMEPOINT
ignores the data up till the timepoint (inclusive)
(default: 0.0)
--location LOCATION a path in the filesystem to where the data are stores
(default: .)
--output OUTPUT a path relative to the location where the results are
to be stored (default: ./HPACED_OUT)
--extension EXTENSION
if set, only the files with the extension (e.g. .xy)
are considered, if not, all files found in the
location are tested (default: None)