xtYao
Computational biologist focused on cancer (epi)genomics. Former PhD student @mskilab , Tri-I Computational Biology at Weill Cornell Medicine
Weill Cornell MedicineUnited States
Pinned Repositories
gGnome
R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
gGnome.js
JaBbA
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
blog.hugo
bwa-mem2
The next version of bwa-mem
CaseReport
Clinical whole genome sequencing report
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
findNewEnhancers_CIntestinalis
The final project for Bioinformatics & Genomes (Bonneau. R). Using MEME to detect conserved motifs in the intergenic regions of co-regulated genes given by clustered time-course micro array data.
fishHook
R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.
Xiaotong_Yao_Thesis
PhD thesis
xtYao's Repositories
xtYao/Xiaotong_Yao_Thesis
PhD thesis
xtYao/blog.hugo
xtYao/bwa-mem2
The next version of bwa-mem
xtYao/CaseReport
Clinical whole genome sequencing report
xtYao/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
xtYao/findNewEnhancers_CIntestinalis
The final project for Bioinformatics & Genomes (Bonneau. R). Using MEME to detect conserved motifs in the intergenic regions of co-regulated genes given by clustered time-course micro array data.
xtYao/fishHook
R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.
xtYao/funcSUMO
To determine what set of gene feature contribute to a RNA binding protein coding gene to be coding a SUMOylated protein.
xtYao/gallery
making interesting pictures of SV in cancer genomes
xtYao/gTrack
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
xtYao/GxG
Scalable GenomicRanges based class for storing, manipulating, and querying genomic matrices and pairwise features.
xtYao/homepage
Xiaotong Yao's homepage
xtYao/iSumo
Analysis for the iSumo paper.
xtYao/JaBbA_alpha
R scripts and datasets for reproducing the figures used in JaBbA paper
xtYao/partialDelly
running certain modes of DELLY on just a subset of a BAM file
xtYao/presentations
Materials for presentations
xtYao/pyranges
Performant Pythonic GenomicRanges
xtYao/QG16_computerlab
Computer_Lab_Material_for_QG16
xtYao/site
The source code of learning-rust.github.io
xtYao/skitools
General purpose mskilab R tools
xtYao/tutorials
Tutorials covering various topics in genomic data analysis.
xtYao/xtyao.github.io
Xiaotong Yao's site
xtYao/xtYao.hugo
hugo styled blog