xtmgah

Pinned Repositories

annotatr
Annotation of Genomic Regions to Genomic Annotations
Language:HTML1 2 00
DDCV
A Visualized Shiny App to Evaluate Drug-Drug Interaction
Language:R12 3 15
EAGLE_LUAD
Genetic and Epigenetic Intratumor Heterogeneity Impacts Prognosis of Lung Adenocarcinoma
Language:R2 2 03
mSigPortal
Integrative mutational signature portal (MsigPortal) for cancer genomic study
Language:R3 4 00
Sherlock-Lung
Bioinformatic analysis scripts for Sherlock-Lung project
Language:R3 2 10
SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Language:Python1 1 01
SigProfilerPlotting
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
Language:Python1 1 00
SigProfilerPlottingR
An R wrapper for running the SigProfilerPlotting framework
Language:R0 1 00

xtmgah's Repositories

xtmgah/awk-cheat-sheet
This is AWK programming language cheat sheet.
xtmgah/denovo-assembly-tutorial
A tutorial for learning de novo assembly
Language:Perl
xtmgah/filo
Useful FILe and stream Operations
Language:C++
xtmgah/Paradigm
PAthway Representation and Analysis by Direct Inference on Graphical Models
Language:C++
xtmgah/peer
A factor analysis package
Language:C++
xtmgah/placsupport
xtmgah/samtools-utilities
Utilities for Samtools ( http://samtools.sourceforge.net/ )
Language:C