Pinned Repositories
aBioMarVsuit
A Biomarker Validation Suit for predicting Survival using gene
awesome-network-analysis
A curated list of awesome network analysis resources.
BCMETA_OLD
Meta-analysis of breast cancer gene expression and clinical data
bhm
Biomarker Threshold Models (version 1.05)
Biomarker
BiomarkerPrediction
Machine Learning Project -- Data Science
biomarkers
Algorithm for discovering combinatorial biomarkers
Biomarkers-Project
BioMDetector
Biomarker gene detector
SVM-RFE-1
SVM-RFE
xulijunji's Repositories
xulijunji/awesome-network-analysis
A curated list of awesome network analysis resources.
xulijunji/bhm
Biomarker Threshold Models (version 1.05)
xulijunji/breast-cancer-metastasis
xulijunji/Breast-cancer-risk-prediction
Classification of Breast Cancer diagnosis Using Support Vector Machines
xulijunji/Breast-Cancer-Scikitlearn
simple tutorial on Machine Learning with Scikitlearn
xulijunji/Breast_Cancer_Prediction
Application of Ensemble Machine Learning classification approach, with SVM, Logistic Regression, Decision Trees as sub Models.
xulijunji/cellpose
a generalist algorithm for cellular segmentation
xulijunji/CISC7201
xulijunji/CS534-FinalProject
Breast Cancer Prediction with PCA, SVM, Logistic Regression
xulijunji/GeneralTools
A selection of perl, python, bash, and R scripts used in general analyses
xulijunji/Heterogeneity
Code accompanying Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
xulijunji/MetaGx
Scripts to perform meta-analysis of cancer gene expression datasets
xulijunji/ml-training-intro
Materials for the "Introduction to Machine Learning" class
xulijunji/MLPB
Machine Learning Problem Bible | Problem Set Here >>
xulijunji/MYCG9a
xulijunji/Parkinsons-Disease-Digital-Biomarker-DREAM-Challenge
Prediction of Parkinson's Disease diagnosis
xulijunji/PCA-with-SVM
Used Principal Component Analysis with Support Vector Machine to classify cancer data
xulijunji/prophet
Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.
xulijunji/python-machine-learning-book
The "Python Machine Learning (1st edition)" book code repository and info resource
xulijunji/RNAseq_titration_results
xulijunji/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
xulijunji/RNASeqDrug
Gene isoforms as expression-based biomarkers predictive of drug response in vitro
xulijunji/sc_mixology
This contains the dataset for comparing scRNA-seq analysis methods
xulijunji/scikit-feature
open-source feature selection repository in python (DMML Lab@ASU)
xulijunji/scikit-learn
scikit-learn: machine learning in Python
xulijunji/Stage-Prediction-of-Cancer
Contains the work being done on finding biomarkers for building classifier for cancer stage prediction
xulijunji/support-vector-machine
An implementation of the L2-SVM for breast cancer detection using the Wisconsin diagnostic dataset.
xulijunji/SVM-and-PCA-for-breast-cancer-classification
I am able to substantially compress the sklearn breast cancer data set by reducing the many features in this dataset down to just two principle components. The compressed data set is nicely classified using a SVM (fed by linear kernel), resulting in a prediction accuracy of over 95%.
xulijunji/SVM-Cancer-diagnostics
Improving cancer diagnostics using machine learning (SVM, Decision Tree, Random Forest)
xulijunji/Wisconsin-Breast-Cancer-Data
Implemented NN, SVM and other classification algorithms. Results and graphs included.