Pinned Repositories
ANTsRNet
Medical image analysis framework merging ANTsR and deep learning
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文总结+润色+审稿+审稿回复
ClustAssess
A set of tools for assessing clustering robustness
xupengfei1009's Repositories
xupengfei1009/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
xupengfei1009/Bioinformatics-Resources
A curated list of resources for learning bioinformatics.
xupengfei1009/ANTsRNet
Medical image analysis framework merging ANTsR and deep learning
xupengfei1009/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
xupengfei1009/awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
xupengfei1009/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
xupengfei1009/awesome-reproducible-research
A curated list of reproducible research case studies, projects, tutorials, and media
xupengfei1009/CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
xupengfei1009/ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文总结+润色+审稿+审稿回复
xupengfei1009/ClustAssess
A set of tools for assessing clustering robustness
xupengfei1009/Data-Analysis
Data Science Using Python
xupengfei1009/DNAm-based-age-predictor
A chronological age predictor based on DNA methylation
xupengfei1009/EstimateClonality
Forked from https://bitbucket.org/nmcgranahan/pancancerclonality/src/master/.
xupengfei1009/fcr2
xupengfei1009/Gene-expression-deconvolution
Gene expression deconvolution
xupengfei1009/genomepy
Download and use genomes the easy way.
xupengfei1009/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
xupengfei1009/GSgalgoR
An evolutionary Algorithm for the Identification and Study of Prognostic Gene Expression Signatures in Cancer (Bioconductor)
xupengfei1009/marchionni_projects
Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data
xupengfei1009/msisensor2
Microsatellite instability (MSI) detection for tumor only data.
xupengfei1009/OptimalGeneNMF
xupengfei1009/Radiology
Python Codes that help to manage medical images for Machine Learning
xupengfei1009/RadiomicsFeatureVisualization
Visualization for radiomics feature generated by pyradiomics
xupengfei1009/RNAcocktail
xupengfei1009/scSigR
Generate signature matrix from single cell data.
xupengfei1009/Seer_LGGs
xupengfei1009/single-cell-bioinformatics
Course material in notebook format for learning about single cell bioinformatics methods
xupengfei1009/singlecell_pnm
:sparkles: Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al
xupengfei1009/TCGAmutations
R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
xupengfei1009/trackplot
Generate IGV style locus tracks from bigWig files in R