Pinned Repositories
5years
AdvancedJavaProject
PDB Sequence Reader, 2D/3D Structure Viewer
aracne-cyni
aRACNE Cytoscape App
Automation-report
Automation report是一款可以解决很多行业领域中设涉及到报告生成的需求，本项目最开始的初衷是为公司内部简化人工流程的一个环节，主要实现目的是将实验室检测得出的下机数据结果与对应的报告模版批量结合生成报告(.pdf)。
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
forum
采用开源论坛系统Flarum建设GATK中文社区，该论坛所有帖子将以markdown代码形式发帖，所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是：https://www.gatk.com.cn/ 对应的broad的GATK主页是；https://software.broadinstitute.org/gatk 本站网址： https://gatk-chinese.github.io/forum/
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
snakepipes
A toolkit based on snakemake and python for analysis of NGS data
VIPA
xuwei684's Repositories
xuwei684/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
xuwei684/NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
xuwei684/snakepipes
A toolkit based on snakemake and python for analysis of NGS data
xuwei684/VIPA
xuwei684/5years
xuwei684/Automation-report
Automation report是一款可以解决很多行业领域中设涉及到报告生成的需求，本项目最开始的初衷是为公司内部简化人工流程的一个环节，主要实现目的是将实验室检测得出的下机数据结果与对应的报告模版批量结合生成报告(.pdf)。
xuwei684/Bioinformatics-cook
perl scripts for bioinformatics analysis
xuwei684/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
xuwei684/cnvkit
Copy number variant detection from targeted DNA sequencing
xuwei684/crisporWebsite
All source code of the crispor.org website
xuwei684/crispr-dav
CRISPR NGS data analysis and visualization pipeline
xuwei684/gatk
Official code repository for GATK versions 4 and up
xuwei684/gdc-docs
Official repository for GDC User Guides in Markdown format
xuwei684/gitLearning
xuwei684/gsoc2019mugqic
xuwei684/methylKit
R package for DNA methylation analysis
xuwei684/mrbait
Pipeline for universal design of target-enrichment probes from various sources of genomic data.
xuwei684/MuSiC2
identifying mutational significance in cancer genomes
xuwei684/NGS-analysis
二代测序数据分析
xuwei684/NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
xuwei684/ngs_learning
生物信息学交流资料
xuwei684/Python-100-Days
Python - 100天从新手到大师
xuwei684/SIMD
A method to infer the methylation expression level for each CpG sites.
xuwei684/simplesam
Simple pure Python SAM parser and objects for working with SAM records
xuwei684/Something_Cool-CpG_Sites-
xuwei684/sra-tools
SRA Tools
xuwei684/ThousandVariantCallersRepo
Thousand Variant Callers Project Github Repo
xuwei684/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
xuwei684/viral-ngs
Viral genomics analysis pipelines
xuwei684/VirTect
Detection of viruses from RNA-Seq on human samples