- Bioinformatics Data Skills: Reproducible and Robust Research with Open Source Tools
- Bioinformatics and Functional Genomics
- Practical Computing for Biologists
- The Biostar Handbook
- Computational Biology A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R
- R for Data Science: Import, Tidy, Transform, Visualize, and Model Data
- ggplot2: Elegant Graphics for Data Analysis (Use R!)
- (https://rna-seqblog.com)
- (http://www.longwoodgenomics.org/)
- (https://liorpachter.wordpress.com/)
- (https://davetang.org/)
- (http://onetipperday.sterding.com/)
- biocworkshop
- Data Analysis in Genome Biology
- Biomedical Data Science
- Introduction to Computational Biology
- Gviz