xy-chen16

xy-chen16's Stars

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python134k1.1k16k26.8k

• jerryji1993/DNABERT

  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Language:Python58814113157

• theislab/scib

  Benchmarking analysis of data integration tools

  Language:Python2981418763

• MAGICS-LAB/DNABERT_2

  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  Language:Shell2661011059

• lixiaotong97/DSU

  [ICLR 2022] Official pytorch implementation of "Uncertainty Modeling for Out-of-Distribution Generalization" in International Conference on Learning Representations (ICLR) 2022.

  Language:Python14231016

• xy-chen16/EpiAnno

  Single-cell epigenomic data annotation via supervised non-linear embedding

  Language:Jupyter Notebook22135

• liwenran/DeepTACT

  DeepTACT: predicting three-dimensional chromatin contacts via bootstrapping deep learning

  Language:Python19056

• xy-chen16/stPlus

  stPlus: reference-based enhancement of spatial transcriptomics

  Language:Jupyter Notebook18158

• xy-chen16/DeepSilencer

  A deep convolutional neural network for the accurate prediction of silencers

  Language:Python12226

• jiang-q19/scPRAM

  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism

  Language:Jupyter Notebook9220

• JulieBaker1/HighlyRegionalGenes

  Language:R70

• Chen-Li-17/simCAS

  simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data

  Language:Jupyter Notebook6102

• gavinatthu/DeepLearning

  The Deep Learning course in THU

  Language:Jupyter Notebook5100

• ShengquanChen/VPAC

  VPAC: Variational projection for accurate clustering of single-cell transcriptomic data

  Language:Python5203

• gavinatthu/ANN_course

  Language:Python30

• gavinatthu/Parttern-Recognition

  Language:TeX3100

• gavinatthu/Shopee-Products-Matching

  Language:Python30

• likeyi19/Cofea

  Language:Jupyter Notebook32

• xy-chen16/EnClaSC

  Language:Jupyter Notebook3100

• gavinatthu/rpg_ramnet

  Code and datasets for the paper "Combining Events and Frames using Recurrent Asynchronous Multimodal Networks for Monocular Depth Prediction" (RA-L, 2021)

  Language:Python20

• xy-chen16/simCAS

  simCAS: an embedding-based method for simulating single-cell chromatin accessibility sequencing data

  Language:Jupyter Notebook20

• likeyi19/Descartes

  Language:Jupyter Notebook1110

• xy-chen16/Cofea

  Language:Jupyter Notebook10

• xy-chen16/extension-doc-templates

  Documentaiton templates for openstack extensions

  1000

• xy-chen16/scEpiTools

  A database to comprehensively interrogate analytic tools for single-cell epigenomic data

  Language:Jupyter Notebook10