Author: Yu-An Huang, Keith C.C. Chan1,Zhu-Hong You
Paper: Constructing Prediction Models from Expression Profiles for Large Scale lncRNA-miRNA Interaction Profiling
File description
Data:
Expression_profile_data:
invalid_association_expression.m: The ids of known lncRNA-miRNA interactions without either of lncRNA and miRNA expression profiles.
invalid_lnc_expression.m: The ids of lncRNAs without lncRNA expression profiles.
invalid_mi_expression.m: The ids of lncRNAs without lncRNA expression profiles.
Known_lncRNA_miRNA_association.m: The id pairs of known lncRNA-miRNA interactions.
lnc_expression_similarity_matrix.m: The lncRNA-lncRNA similarity matrix of expression profiles.
mi_expression_similarity_matrix.m: The miRNA-miRNA similarity matrix of expression profiles.
Function_data:
invalid_association_function.m: The ids of known lncRNA-miRNA interactions without either of lncRNA and miRNA function feature.
invalid_lnc_function.m: The ids of lncRNAs without lncRNA function feature.
invalid_mi_function.m: The ids of lncRNAs without lncRNA function feature.
Known_lncRNA_miRNA_association.m: The id pairs of known lncRNA-miRNA interactions.
lnc_function_similarity_matrix.m: The lncRNA-lncRNA similarity matrix of function.
mi_function_similarity_matrix.m: The miRNA-miRNA similarity matrix of function.
Sequence_data:
invalid_lnc_seq.m: The ids of lncRNAs without lncRNA sequence information.
Known_lncRNA_miRNA_association.m: The id pairs of known lncRNA-miRNA interactions.
lnc_seq_similarity_matrix.m: The lncRNA-lncRNA similarity matrix of sequence.
mi_seq_similarity_matrix.m: The miRNA-miRNA similarity matrix of sequence.
lncRNA-miRNA_interaction:
lncRNA_id.m The id list of lncRNA name.
miRNA_id.m The id list of miRNA name.
lncRNA-miRNA_idlist.m: The lncRNA-miRNA interaction data downloaded from lncRNASNP.
Cross_validation:
leave-one-out_CV:
EPLMI_LOOCV.m: The codes for the implemention of leave-one-out cross validation.
Plot_roc_curve: The codes for plotting the ROC curves based on the LOOCV results.
5-fold_CV:
main.m: The main program for the implemention of 5-fold cross validation.
Generate_random_roder_5fold.m: The codes for generating the random sample lists.
EPLMI5cv: The subprogram for the implemention of 5-fold cross validation.
Position2AUC.m: The codes for plotting the ROC curves based on the ranks of testing samples.