Pinned Repositories
CoCoNet
Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types.
DRComparison
Comparison of dimensionality reduction methods
iDEA
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
iDEA-Analysis
PQLseq
:exclamation: This is a read-only mirror of the CRAN R package repository. PQLseq — Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies
SPARK
Spatially resolved transcriptomic analysis
SPARK-Analysis
spatially resolved data analysis
SPARK-X-Analysis
SRTsim
SRTsim-Analysis
Zhou Lab's Repositories
xzhoulab/SPARK
Spatially resolved transcriptomic analysis
xzhoulab/iDEA
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
xzhoulab/DRComparison
Comparison of dimensionality reduction methods
xzhoulab/SRTsim
xzhoulab/SPARK-Analysis
spatially resolved data analysis
xzhoulab/iDEA-Analysis
xzhoulab/CoCoNet
Composite likelihood-based Covariance regression Network model for identification of trait-relevant tissues or cell types.
xzhoulab/SPARK-X-Analysis
xzhoulab/SRTsim-Analysis
xzhoulab/awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
xzhoulab/PQLseq
:exclamation: This is a read-only mirror of the CRAN R package repository. PQLseq — Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies
xzhoulab/BASS
Bayesian Analytics for Spatial Segmentation
xzhoulab/DBSLMM
xzhoulab/DBSLMM-Analysis
Simulation and Real data analysis
xzhoulab/DECComparison
deconvolution methods comparison for summer students training
xzhoulab/ImmuCC
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
xzhoulab/nnSVG
nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data
xzhoulab/SpatialDE
Test genes for Spatial Variation
xzhoulab/spatialDE-1
R wrapper for SpatialDE
xzhoulab/SpatialPCA
Spatially aware dimension reduction for spatial transcriptomics.
xzhoulab/SPRINT
Identifying spatial pattern genes